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GH49 GH GH family — see CAZy reference
28
target proteins
27
CGCs
all
tree leaves
30
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh49_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH49 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH49 | GH | 28 | — | — |
| S1_8 | S1 | 6 | — | — |
| S1_20 | S1 | 6 | — | — |
| GH27 | GH | 5 | — | — |
| S1_15 | S1 | 5 | — | — |
| AA10 | AA | 3 | — | — |
| GH43 | GH | 3 | — | — |
| S1_16 | S1 | 3 | — | — |
| S1_14 | S1 | 2 | — | — |
| S1_27 | S1 | 2 | — | — |
| GH148 | GH | 2 | — | — |
| S1_97 | S1 | 1 | — | — |
| GH105 | GH | 1 | — | — |
| GH78 | GH | 1 | — | — |
| GH43_34 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH49_SSN.cys · 0.0 MB |
|---|---|
| Newick | gh49_phylogeny.nwk |
| MUSCLE alignment | gh49_phylogeny.aln.faa |
| Target proteins (FASTA) | gh49_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |