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GH43 GH GH family — see CAZy reference
62
target proteins
4,059
CGCs
999 / 62
tree leaves
417
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh43_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH43 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH43_26 | GH | 590 | — | — |
| GH3 | GH | 562 | — | — |
| GH43_11 | GH | 497 | — | — |
| GH10 | GH | 477 | — | — |
| GH43_12 | GH | 459 | — | — |
| GH43_1 | GH | 454 | — | — |
| GH43_5 | GH | 348 | — | — |
| GH43_10 | GH | 339 | — | — |
| GH43_29 | GH | 306 | — | — |
| GH51_1 | GH | 296 | — | — |
| GH105 | GH | 260 | — | — |
| GH144 | GH | 238 | — | — |
| GH28 | GH | 236 | — | — |
| GH43_34 | GH | 233 | — | — |
| S1_7 | S1 | 230 | — | — |
Downloads
| Full SSN (Cytoscape) | GH43_SSN.cys · 101.2 MB |
|---|---|
| Newick | gh43_phylogeny.max999.nwk |
| MUSCLE alignment | gh43_phylogeny.aln.faa |
| Target proteins (FASTA) | gh43_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |