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PL44 PL PL family — see CAZy reference
23
target proteins
21
CGCs
all
tree leaves
16
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl44_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL44 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL44 | PL | 23 | — | — |
| GH3 | GH | 5 | — | — |
| PL39 | PL | 3 | — | — |
| PL6 | PL | 2 | — | — |
| GH154 | GH | 2 | — | — |
| S1_2 | S1 | 1 | — | — |
| PL15_1 | PL | 1 | — | — |
| GH32 | GH | 1 | — | — |
| PL12 | PL | 1 | — | — |
| S1_16 | S1 | 1 | — | — |
| GH2_2 | GH | 1 | — | — |
| S1_27 | S1 | 1 | — | — |
| PL17_2 | PL | 1 | — | — |
| PL7_5 | PL | 1 | — | — |
| GH88 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL44_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl44_phylogeny.nwk |
| MUSCLE alignment | pl44_phylogeny.aln.faa |
| Target proteins (FASTA) | pl44_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |