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PL39 PL PL family — see CAZy reference
40
target proteins
40
CGCs
all
tree leaves
20
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl39_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL39 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL39 | PL | 40 | — | — |
| PL6 | PL | 15 | — | — |
| GH154 | GH | 8 | — | — |
| PL17_2 | PL | 6 | — | — |
| GH88 | GH | 6 | — | — |
| S1_7 | S1 | 3 | — | — |
| S1_2 | S1 | 3 | — | — |
| S1_15 | S1 | 3 | — | — |
| PL44 | PL | 3 | — | — |
| S1_20 | S1 | 1 | — | — |
| GH105 | GH | 1 | — | — |
| PL25 | PL | 1 | — | — |
| GH18 | GH | 1 | — | — |
| S1_23 | S1 | 1 | — | — |
| GH168 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL39_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl39_phylogeny.nwk |
| MUSCLE alignment | pl39_phylogeny.aln.faa |
| Target proteins (FASTA) | pl39_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |