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GH5 GH GH family — see CAZy reference
260
target proteins
3,048
CGCs
999 / 260
tree leaves
411
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_46 | GH | 421 | — | — |
| GH3 | GH | 415 | — | — |
| GH5_13 | GH | 382 | — | — |
| GH5_2 | GH | 287 | — | — |
| GH5 | GH | 260 | — | — |
| GH5_7 | GH | 213 | — | — |
| GT2 | GT | 208 | — | — |
| GH5_25 | GH | 206 | — | — |
| GH26 | GH | 191 | — | — |
| GH5_4 | GH | 179 | — | — |
| GH30_1 | GH | 174 | — | — |
| GH130_1 | GH | 133 | — | — |
| GH16_3 | GH | 129 | — | — |
| S1_7 | S1 | 122 | — | — |
| CE20 | CE | 119 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_SSN.cys · 28.0 MB |
|---|---|
| Newick | gh5_phylogeny.max999.nwk |
| MUSCLE alignment | gh5_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |