↵
GH5_25 GH GH family — see CAZy reference
206
target proteins
205
CGCs
all
tree leaves
86
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_25_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_25 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_25 | GH | 206 | — | — |
| GH3 | GH | 75 | — | — |
| S1_8 | S1 | 19 | — | — |
| CE20 | CE | 18 | — | — |
| GH43_12 | GH | 15 | — | — |
| GH10 | GH | 14 | — | — |
| S1_7 | S1 | 13 | — | — |
| S1_4 | S1 | 11 | — | — |
| GH5_46 | GH | 11 | — | — |
| GH5_2 | GH | 10 | — | — |
| GH30 | GH | 9 | — | — |
| GH9 | GH | 9 | — | — |
| GH94 | GH | 9 | — | — |
| GH31_4 | GH | 9 | — | — |
| CBM85 | CBM | 8 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_25_SSN.cys · 0.5 MB |
|---|---|
| Newick | gh5_25_phylogeny.nwk |
| MUSCLE alignment | gh5_25_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_25_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |