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PL3_1 PL PL family — see CAZy reference
19
target proteins
19
CGCs
all
tree leaves
14
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl3_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL3_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL3_1 | PL | 19 | — | — |
| CE9 | CE | 4 | — | — |
| S1_9 | S1 | 3 | — | — |
| GT30 | GT | 3 | — | — |
| GH5_47 | GH | 3 | — | — |
| S1_23 | S1 | 1 | — | — |
| CE8 | CE | 1 | — | — |
| PL27 | PL | 1 | — | — |
| GH127 | GH | 1 | — | — |
| GH5_2 | GH | 1 | — | — |
| S1_15 | S1 | 1 | — | — |
| GH30_3 | GH | 1 | — | — |
| GH5_46 | GH | 1 | — | — |
| GH30 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | PL3_1_SSN.cys · 0.0 MB |
|---|---|
| Newick | pl3_1_phylogeny.nwk |
| MUSCLE alignment | pl3_1_phylogeny.aln.faa |
| Target proteins (FASTA) | pl3_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |