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S1_33 S1 S1 family — see CAZy reference
100
target proteins
98
CGCs
all
tree leaves
111
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_33_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_33 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_33 | S1 | 100 | — | — |
| GH105 | GH | 28 | — | — |
| GH106 | GH | 19 | — | — |
| CE12 | CE | 18 | — | — |
| GH28 | GH | 13 | — | — |
| CE20 | CE | 12 | — | — |
| GH2_11 | GH | 9 | — | — |
| GH43_18 | GH | 9 | — | — |
| PL40 | PL | 8 | — | — |
| GH31_9 | GH | 7 | — | — |
| GH78 | GH | 7 | — | — |
| GH159 | GH | 6 | — | — |
| PL29 | PL | 6 | — | — |
| GH88 | GH | 6 | — | — |
| GH33 | GH | 6 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_33_SSN.cys · 0.1 MB |
|---|---|
| Newick | s1_33_phylogeny.nwk |
| MUSCLE alignment | s1_33_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_33_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |