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S1_62 S1 S1 family — see CAZy reference
167
target proteins
166
CGCs
all
tree leaves
149
co-occurring families
Overview
| Class | S1 |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of s1_62_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from S1_62 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| S1_62 | S1 | 167 | — | — |
| GH3 | GH | 32 | — | — |
| GH29 | GH | 21 | — | — |
| S1_7 | S1 | 20 | — | — |
| GH92 | GH | 19 | — | — |
| GH20 | GH | 18 | — | — |
| S1_14 | S1 | 18 | — | — |
| CBM38 | CBM | 16 | — | — |
| GH33 | GH | 15 | — | — |
| GH10 | GH | 14 | — | — |
| S1_8 | S1 | 13 | — | — |
| CBM9 | CBM | 13 | — | — |
| S1_17 | S1 | 12 | — | — |
| S1_11 | S1 | 12 | — | — |
| GH95 | GH | 11 | — | — |
Downloads
| Full SSN (Cytoscape) | S1_62_SSN.cys · 0.3 MB |
|---|---|
| Newick | s1_62_phylogeny.nwk |
| MUSCLE alignment | s1_62_phylogeny.aln.faa |
| Target proteins (FASTA) | s1_62_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |