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Firmicutes PHYLUM
GTDB lineage: d__Bacteria;p__Firmicutes
9,242
CGCs
309
host MAGs
396
Distinct CAZyme and Sulfatase subfamilies
Overview
| GTDB rank | phylum |
|---|---|
| GTDB lineage | d__Bacteria;p__Firmicutes |
| Host MAGs (with ≥1 CGC) | 309 of 22,607 |
| CGCs in this group | 9,242 |
| Distinct CAZyme and Sulfatase subfamilies | 396 |
Sequence Similarity Network
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys. The bundled global x/y layout, node categories, and edge bitscores/e-values are all preloaded as attributes.
SCoNe co-occurrence
Top subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GT2 | GT | 1,466 | — | — |
| GT4 | GT | 1,154 | — | — |
| GT119 | GT | 686 | — | — |
| GH1 | GH | 660 | — | — |
| CE4 | CE | 582 | — | — |
| GT51 | GT | 440 | — | — |
| GH13_31 | GH | 411 | — | — |
| GH3 | GH | 398 | — | — |
| GT28 | GT | 373 | — | — |
| GH4 | GH | 369 | — | — |
| GH32 | GH | 329 | — | — |
| GH18 | GH | 316 | — | — |
| GH73 | GH | 230 | — | — |
| CE9 | CE | 201 | — | — |
| GH13_20 | GH | 181 | — | — |
Downloads
| Full SSN (Cytoscape) | Firmicutes_SSN.cys · 134.2 MB |
|---|---|
| CGC list | cgcs.txt · 9,242 IDs |
| MAG list | mags.txt · 309 IDs |
| Ranked families | ranked_families.tsv · 396 families |