↵
GH13_1 GH GH family — see CAZy reference
34
target proteins
34
CGCs
all
tree leaves
15
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh13_1_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH13_1 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH13_1 | GH | 34 | — | — |
| GH13 | GH | 11 | — | — |
| GT35 | GT | 5 | — | — |
| GH57_1 | GH | 3 | — | — |
| GH15 | GH | 2 | — | — |
| GH77 | GH | 2 | — | — |
| GH13_2 | GH | 1 | — | — |
| GH13_20 | GH | 1 | — | — |
| GH13_30 | GH | 1 | — | — |
| S1_27 | S1 | 1 | — | — |
| GH119 | GH | 1 | — | — |
| S1_16 | S1 | 1 | — | — |
| GH13_11 | GH | 1 | — | — |
| S1_4 | S1 | 1 | — | — |
| GH13_10 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH13_1_SSN.cys · 0.0 MB |
|---|---|
| Newick | gh13_1_phylogeny.nwk |
| MUSCLE alignment | gh13_1_phylogeny.aln.faa |
| Target proteins (FASTA) | gh13_1_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |