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GH170 GH GH family — see CAZy reference
220
target proteins
208
CGCs
all
tree leaves
33
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh170_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH170 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH170 | GH | 220 | — | — |
| GH4 | GH | 32 | — | — |
| CE9 | CE | 19 | — | — |
| S1_9 | S1 | 17 | — | — |
| GH3 | GH | 9 | — | — |
| GH1 | GH | 8 | — | — |
| GH171 | GH | 7 | — | — |
| GH129 | GH | 2 | — | — |
| GT5 | GT | 2 | — | — |
| S1_37 | S1 | 2 | — | — |
| GH31_1 | GH | 2 | — | — |
| GH13_20 | GH | 2 | — | — |
| GH116 | GH | 2 | — | — |
| GH53 | GH | 2 | — | — |
| GH189 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH170_SSN.cys · 1.2 MB |
|---|---|
| Newick | gh170_phylogeny.nwk |
| MUSCLE alignment | gh170_phylogeny.aln.faa |
| Target proteins (FASTA) | gh170_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |