↵
GH2_12 GH GH family — see CAZy reference
34
target proteins
34
CGCs
all
tree leaves
33
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_12_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_12 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_12 | GH | 34 | — | — |
| GH95 | GH | 3 | — | — |
| S1_27 | S1 | 2 | — | — |
| S1_6 | S1 | 2 | — | — |
| GH2_20 | GH | 2 | — | — |
| GH35 | GH | 2 | — | — |
| S1_8 | S1 | 2 | — | — |
| GH172 | GH | 2 | — | — |
| GH78 | GH | 2 | — | — |
| S1_55 | S1 | 1 | — | — |
| GH43_37 | GH | 1 | — | — |
| GH53 | GH | 1 | — | — |
| GH147 | GH | 1 | — | — |
| CE7 | CE | 1 | — | — |
| GH110 | GH | 1 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_12_SSN.cys · 0.0 MB |
|---|---|
| Newick | gh2_12_phylogeny.nwk |
| MUSCLE alignment | gh2_12_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_12_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |