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GH2_3 GH GH family — see CAZy reference
132
target proteins
131
CGCs
all
tree leaves
60
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh2_3_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH2_3 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH2_3 | GH | 132 | — | — |
| GH3 | GH | 10 | — | — |
| GH2_10 | GH | 7 | — | — |
| GH154 | GH | 6 | — | — |
| GH17 | GH | 6 | — | — |
| GH20 | GH | 5 | — | — |
| GH1 | GH | 5 | — | — |
| GH78 | GH | 5 | — | — |
| GH88 | GH | 4 | — | — |
| GH16_3 | GH | 3 | — | — |
| PL37 | PL | 2 | — | — |
| GH105 | GH | 2 | — | — |
| GH43_28 | GH | 2 | — | — |
| CE12 | CE | 2 | — | — |
| GH28 | GH | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH2_3_SSN.cys · 0.3 MB |
|---|---|
| Newick | gh2_3_phylogeny.nwk |
| MUSCLE alignment | gh2_3_phylogeny.aln.faa |
| Target proteins (FASTA) | gh2_3_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |