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GH31_14 GH GH family — see CAZy reference
62
target proteins
62
CGCs
all
tree leaves
54
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh31_14_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH31_14 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH31_14 | GH | 62 | — | — |
| GH29 | GH | 32 | — | — |
| S1_16 | S1 | 16 | — | — |
| CE20 | CE | 13 | — | — |
| S1_15 | S1 | 13 | — | — |
| S1_17 | S1 | 12 | — | — |
| S1_56 | S1 | 11 | — | — |
| GH141 | GH | 11 | — | — |
| GH95 | GH | 10 | — | — |
| GH117 | GH | 8 | — | — |
| S1_4 | S1 | 7 | — | — |
| GH28 | GH | 5 | — | — |
| GH92 | GH | 5 | — | — |
| S1_7 | S1 | 3 | — | — |
| PL29 | PL | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH31_14_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh31_14_phylogeny.nwk |
| MUSCLE alignment | gh31_14_phylogeny.aln.faa |
| Target proteins (FASTA) | gh31_14_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |