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GH51 GH GH family — see CAZy reference
11
target proteins
1,218
CGCs
999 / 11
tree leaves
274
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh51_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH51 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH51_1 | GH | 1,015 | — | — |
| GH51_2 | GH | 155 | — | — |
| GH43_5 | GH | 142 | — | — |
| GH43_4 | GH | 116 | — | — |
| GH43_26 | GH | 103 | — | — |
| GH43_29 | GH | 96 | — | — |
| GH146 | GH | 85 | — | — |
| GH3 | GH | 78 | — | — |
| GH51_3 | GH | 77 | — | — |
| GH127 | GH | 75 | — | — |
| GH10 | GH | 64 | — | — |
| CE1 | CE | 63 | — | — |
| S1_7 | S1 | 62 | — | — |
| S1_4 | S1 | 57 | — | — |
| GH27 | GH | 44 | — | — |
Downloads
| Full SSN (Cytoscape) | GH51_SSN.cys · 22.1 MB |
|---|---|
| Newick | gh51_phylogeny.max999.nwk |
| MUSCLE alignment | gh51_phylogeny.aln.faa |
| Target proteins (FASTA) | gh51_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |