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GH113 GH GH family — see CAZy reference
557
target proteins
554
CGCs
999 / 557
tree leaves
83
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh113_proteins.faa (subsampled to 999 sequences, seed 42) |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH113 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH113 | GH | 557 | — | — |
| GT2 | GT | 445 | — | — |
| GH130_2 | GH | 12 | — | — |
| S1_8 | S1 | 8 | — | — |
| GH109 | GH | 8 | — | — |
| GH2_13 | GH | 8 | — | — |
| GH130_1 | GH | 8 | — | — |
| CE7 | CE | 8 | — | — |
| GH26 | GH | 7 | — | — |
| GH144 | GH | 6 | — | — |
| S1_6 | S1 | 6 | — | — |
| S1_15 | S1 | 4 | — | — |
| GH9 | GH | 3 | — | — |
| S1_16 | S1 | 3 | — | — |
| CE4 | CE | 3 | — | — |
Downloads
| Full SSN (Cytoscape) | GH113_SSN.cys · 6.9 MB |
|---|---|
| Newick | gh113_phylogeny.max999.nwk |
| MUSCLE alignment | gh113_phylogeny.aln.faa |
| Target proteins (FASTA) | gh113_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |