↵
GH5_36 GH GH family — see CAZy reference
67
target proteins
66
CGCs
all
tree leaves
49
co-occurring families
Overview
| Class | GH |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of gh5_36_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from GH5_36 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| GH5_36 | GH | 67 | — | — |
| GH26 | GH | 4 | — | — |
| GH140 | GH | 3 | — | — |
| CE20 | CE | 3 | — | — |
| GH105 | GH | 2 | — | — |
| PL1_2 | PL | 2 | — | — |
| GH130_1 | GH | 2 | — | — |
| GH5_26 | GH | 2 | — | — |
| GH1 | GH | 2 | — | — |
| GT4 | GT | 2 | — | — |
| CE15 | CE | 2 | — | — |
| GH10 | GH | 2 | — | — |
| GH27 | GH | 2 | — | — |
| GH5 | GH | 2 | — | — |
| CE7 | CE | 2 | — | — |
Downloads
| Full SSN (Cytoscape) | GH5_36_SSN.cys · 0.1 MB |
|---|---|
| Newick | gh5_36_phylogeny.nwk |
| MUSCLE alignment | gh5_36_phylogeny.aln.faa |
| Target proteins (FASTA) | gh5_36_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |