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PL10 PL PL family — see CAZy reference
6
target proteins
350
CGCs
all
tree leaves
110
co-occurring families
Overview
| Class | PL |
|---|---|
| Annotation source | dbCAN consensus (HMM + DIAMOND, "recommended-result" column) |
| SSN source | Subset of global_ssn.sqlite (DIAMOND e ≤ 1e-30) |
| Tree input | MUSCLE-super5 alignment of pl10_proteins.faa |
| Tree method | FastTreeMP −lg −nosupport |
Phylogeny
Sequence Similarity Network
Subset of the global SSN restricted to proteins from PL10 CGCs.
SSN
.cys
Download
.cys
To open in Cytoscape Desktop (free):
File → Open and pick the .cys.SCoNe co-occurrence
Taxonomy sunburst
Host distribution
Co-occurring subfamilies
| Subfamily | Class | CGCs | # genes | # SSN clusters |
|---|---|---|---|---|
| PL10_1 | PL | 200 | — | — |
| PL10_3 | PL | 126 | — | — |
| GH28 | GH | 60 | — | — |
| GH105 | GH | 51 | — | — |
| CE12 | CE | 43 | — | — |
| CE8 | CE | 32 | — | — |
| GH43_10 | GH | 25 | — | — |
| PL1_2 | PL | 25 | — | — |
| PL10_2 | PL | 24 | — | — |
| S1_8 | S1 | 24 | — | — |
| S1_7 | S1 | 24 | — | — |
| S1_15 | S1 | 14 | — | — |
| GH43_9 | GH | 13 | — | — |
| PL1 | PL | 13 | — | — |
| PL9_1 | PL | 12 | — | — |
Downloads
| Full SSN (Cytoscape) | PL10_SSN.cys · 1.4 MB |
|---|---|
| Newick | pl10_phylogeny.nwk |
| MUSCLE alignment | pl10_phylogeny.aln.faa |
| Target proteins (FASTA) | pl10_proteins.faa |
| All proteins in associated CGCs | sequences.faa |
| CGC list | cgcs.txt |
| Co-occurring families | ranked_families.tsv |